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AT5G15930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.776
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant adhesion molecule 1
Curator
Summary (TAIR10)
Encodes a putative plant adhesion molecule.
Computational
Description (TAIR10)
plant adhesion molecule 1 (PAM1); FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G02460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831450eggNOG:COG5210eggNOG:KOG1102EMBL:AF069528
EMBL:AL391145EMBL:AY087917EMBL:CP002688EnsemblPlants:AT5G15930
EnsemblPlants:AT5G15930.1entrez:831450GeneID:831450Gramene:AT5G15930.1
hmmpanther:PTHR22957hmmpanther:PTHR22957:SF212HOGENOM:HOG000242796InterPro:IPR000195
KEGG:ath:AT5G15930KO:K19944OMA:CHDDLLKPfam:PF00566
Pfscan:PS50086PhylomeDB:O81347PIR:T51376PROSITE:PS50086
Proteomes:UP000006548RefSeq:NP_197097.1SMART:SM00164SMR:O81347
STRING:3702.AT5G15930.1SUPFAM:SSF47923TAIR:AT5G15930tair10-symbols:PAM1
UniGene:At.9873UniProt:O81347
Coordinates (TAIR10) chr5:+:5200329..5202250
Molecular Weight (calculated) 41030.20 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.24
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MERKRTKDSE PGPVPLLVPV DRFGFLKQEH GSSPQRFTKT KSSINYEKEE KRVTKWRKMI GTGGSDWKHY VRRKPHVVKR RIRKGIPDCL RGLVWQLISG
101: SRDLLLMNPG VYVQLVIYET SASELDIIRD ISRTFPSHVF FQKRHGPGQR SLYNVLKAYS VYDRDVGYVQ GMGFIAGLLL LYMSEEDAFW LLVALLKGAV
201: HSPIEGLYQA GLPLVQQYLL QFDQLVRELM PKLGEHFTQE MINPSMYASQ WFITVFSYSL PFHSALRIWD VFLAEGVKIV FKVGLALLKH CHDDLLKLPF
301: EELMHALRNF PEDAMDPDTL LPLAYSIKVS KRLEEMKQDC DKAVAKPTQT AKSVRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)