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AT5G15750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; FUNCTIONS IN: RNA binding, rRNA binding; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), RNA-binding S4 (InterPro:IPR002942); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:831431eggNOG:COG0522eggNOG:KOG4655EMBL:AK175183
EMBL:BT025770EMBL:CP002688EnsemblPlants:AT5G15750EnsemblPlants:AT5G15750.1
entrez:831431Gene3D:3.10.290.10GeneID:831431GO:GO:0019843
GO:GO:0022627Gramene:AT5G15750.1hmmpanther:PTHR11831hmmpanther:PTHR11831:SF1
HOGENOM:HOG000213883InterPro:IPR001912InterPro:IPR002942InterPro:IPR022801
KEGG:ath:AT5G15750KO:K14560OMA:KVDFLNWPANTHER:PTHR11831
Pfam:PF00163Pfam:PF01479Pfscan:PS50889PhylomeDB:Q683D4
PROSITE:PS50889Proteomes:UP000006548RefSeq:NP_568321.1SMART:SM00363
SMART:SM01390SMR:Q683D4STRING:3702.AT5G15750.1SUPFAM:SSF55174
TAIR:AT5G15750UniGene:At.31757UniProt:Q683D4
Coordinates (TAIR10) chr5:+:5141449..5142701
Molecular Weight (calculated) 21768.60 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.64
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKLKYHEKK LIKKVNFLEW KREGNHRENE ITYRYHMGSR DDYKKYSGLC RMVQKLTNIM KQMDPADPFR IQMTDMLLEK LYNMGVIPTR KSLTLTERLS
101: VSSFCRRRLS TVLVHLKFAE HHKEAVTYIE QGHVRVGPET ITDPAFLVTR NMEDFITWVD SSKIKRKVLE YNDTLDDYDM LA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)