AT5G15720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-motif lipase 7 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains lipase signature motif and GDSL domain. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDSL-motif lipase 7 (GLIP7); FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5124684..5126155 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40229.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSLLICLVL LELVWLGNGQ SRDHQPLAPA FFVFGDSLVD SGNNNYIPTL ARANYFPYGI DFGFPTGRFC NGRTVVDYGA TYLGLPLVPP YLSPLSIGQN 101: ALRGVNYASA AAGILDETGR HYGARTTFNG QISQFEITIE LRLRRFFQNP ADLRKYLAKS IIGINIGSND YINNYLMPER YSTSQTYSGE DYADLLIKTL 201: SAQISRLYNL GARKMVLAGS GPLGCIPSQL SMVTGNNTSG CVTKINNMVS MFNSRLKDLA NTLNTTLPGS FFVYQNVFDL FHDMVVNPSR YGLVVSNEAC 301: CGNGRYGGAL TCLPLQQPCL DRNQYVFWDA FHPTETANKI IAHNTFSKSA NYSYPISVYE LAKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)