AT5G15480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : C2H2-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G01030.1); Has 171 Blast hits to 168 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:5025952..5027160 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46218.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDEHQDLHK PINGALRDLK ITRSQKETEK STNQQQDVTC YYGLRENSKK KTQESPEPMK KILFRCEECG KGFRYEKYFK NHRSMMHLSP NEKVCEESLM 101: TLSRSLGFVK KKKRSRLGRS GKTLFTTFLE PSSIFDATDE ELEVADCLIL LSKSAPKVVD ELKSLSEAVR VTPETPESSY DLGCLLNKKP RKGGELESGV 201: LSNEQRLMEE GFSSYGTSKE PASFLRDENR LDQQKRRKDG EFESGLLSNE QRLLEEEITT PVTFKGPASS LRHKCALDRN GGEFGPEFLS NEQTLMEETW 301: KEPVSFLEDK HEFDQRKMRE AGDFESRFYR IELGVGAMEC TSSDTDMLTQ SDKKNVEHRC RLCNKIFSSY QALGGHQTFH RMSKCKNKKN GIEESVEPRM 401: TL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)