AT5G15430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant calmodulin-binding protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G39380.1); Has 2981 Blast hits to 2520 proteins in 284 species: Archae - 2; Bacteria - 98; Metazoa - 1113; Fungi - 263; Plants - 238; Viruses - 17; Other Eukaryotes - 1250 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5010180..5011616 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53592.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEETVRLPN SPDVNISWRR ISTGKLSFLY TQEKVVPNYL RSPTGSCHDA CKYGRKDESE DKPRVPHRKR VSRSFSGAIN LDSPLRKKAL TKPLLSPSRR 101: CDSVGGFDHA KSQVRNFSSG VCDVKKSHAD GTNEKVVSVS ESRLADSTKR KKKKKKTVYV SRGRAKEIVE QKRRVTALKL KAVAQTAEIA LRRSTVKRKK 201: MNGGSKAAEQ KKAVMALRRA SMSSKGCSRC LKTKKESNSL SVPLKKTRKH VGDKCKDLVE EKTLYVIKME TVDEIVESEL NQRCVMDSPI DDPKSEKSQD 301: KGECIETEHE DESSQEEEDE EEEDENVSVS EDKNTTREGK SKAFSAESAI TGNAMKLRIR RGKIIDFGSE GNSPRKLKFK RGKIISGADT TSKSGGRRRL 401: KTKGTNLSND KEQQRKPRVV LKHQDTEKKR ESRVLLFNKV IKETANKLVQ TRKSKVKALV GAFESVISLQ EKTSSATT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)