AT5G15340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 30617 Blast hits to 12777 proteins in 204 species: Archae - 0; Bacteria - 4; Metazoa - 33; Fungi - 16; Plants - 30223; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4982273..4984144 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70090.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKCLSYQKVR LLLRHCAHRS FLRPGKELHA VLTTSGLKKA PRSYLSNALF QFYASSGEMV TAQKLFDEIP LSEKDNVDWT TLLSSFSRYG LLVNSMKLFV 101: EMRRKRVEID DVSVVCLFGV CAKLEDLGFA QQGHGVAVKM GVLTSVKVCN ALMDMYGKCG LVSEVKRIFE ELEEKSVVSW TVVLDTVVKW EGLERGREVF 201: HEMPERNAVA WTVMVAGYLG AGFTREVLEL LAEMVFRCGH GLNFVTLCSM LSACAQSGNL VVGRWVHVYA LKKEMMMGEE ASYDDVMVGT ALVDMYAKCG 301: NIDSSMNVFR LMRKRNVVTW NALFSGLAMH GKGRMVIDMF PQMIREVKPD DLTFTAVLSA CSHSGIVDEG WRCFHSLRFY GLEPKVDHYA CMVDLLGRAG 401: LIEEAEILMR EMPVPPNEVV LGSLLGSCSV HGKVEIAERI KRELIQMSPG NTEYQILMSN MYVAEGRSDI ADGLRGSLRK RGIRKIPGLS SIYVNDSVHR 501: FSSGDRSHPR TKEIYLKLNE VIERIRSAGY VPDVSGLVSH SEGDLEEKEQ ALCCHSEKLA VCFGLLETKP STPLLVFKNL RICRDCHSAM KIVSKVYDRE 601: IIIRDRNRFH QFKGGSCSCS DYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)