AT5G15030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.764 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Paired amphipathic helix (PAH2) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1); Has 744 Blast hits to 575 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 160; Plants - 330; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4866954..4869133 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30951.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 271 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPFGAFIYI SFVIPDFCTI LITSRNASSE MPGYFITISL IVDVLISHEE TERTPDEIVV PRSPRHGGNI ERSIYLDPSL GMTISDARAY LQQVKNTFID 101: HDERDKYAMF RKVLFDFKAQ RIVADRSDSA RFCSHLKDLS DLFQIFSERM KRIGDKEIDG SGSQNQHPVG SPRNELQGQS PKPGNGNTKD ALTTDDALAY 201: LKEIKDVFHD QKYKYHLFLE IMSDFKAQRT DTSVVIARVK DLLKGHNHLI LVFNKFLPHG FEITLDDEDE D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)