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AT5G15030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.764
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Paired amphipathic helix (PAH2) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1); Has 744 Blast hits to 575 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 160; Plants - 330; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AL391146EMBL:CP002688
EnsemblPlants:AT5G15030EnsemblPlants:AT5G15030.1entrez:831355ExpressionAtlas:Q9LFQ2
Gene3D:1.20.1160.11GeneID:831355GO:GO:0006355Gramene:AT5G15030.1
hmmpanther:PTHR12346hmmpanther:PTHR12346:SF6InterPro:IPR003822OMA:FGQNQVP
Pfam:PF02671Pfscan:PS51477PhylomeDB:Q9LFQ2PIR:T51448
PROSITE:PS51477Proteomes:UP000006548RefSeq:NP_197007.1SMR:Q9LFQ2
STRING:3702.AT5G15030.2SUPFAM:SSF47762TAIR:AT5G15030UniGene:At.31851
UniProt:Q9LFQ2
Coordinates (TAIR10) chr5:-:4866954..4869133
Molecular Weight (calculated) 30951.70 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.39
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPFGAFIYI SFVIPDFCTI LITSRNASSE MPGYFITISL IVDVLISHEE TERTPDEIVV PRSPRHGGNI ERSIYLDPSL GMTISDARAY LQQVKNTFID
101: HDERDKYAMF RKVLFDFKAQ RIVADRSDSA RFCSHLKDLS DLFQIFSERM KRIGDKEIDG SGSQNQHPVG SPRNELQGQS PKPGNGNTKD ALTTDDALAY
201: LKEIKDVFHD QKYKYHLFLE IMSDFKAQRT DTSVVIARVK DLLKGHNHLI LVFNKFLPHG FEITLDDEDE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)