AT5G14900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.943 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : helicase associated (HA2) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
helicase associated (HA2) domain-containing protein; FUNCTIONS IN: helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Domain of unknown function DUF1605 (InterPro:IPR011709); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 5771 Blast hits to 5717 proteins in 1127 species: Archae - 0; Bacteria - 1821; Metazoa - 1566; Fungi - 1074; Plants - 520; Viruses - 0; Other Eukaryotes - 790 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4822676..4823581 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34744.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 301 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNLANTVLT LKGLSVKNLV RFDLIDSPAP DTLARALDDL YHLGALDDDC NLTKTGEMMS EFPLDPQMAK MLIVSPQFNC SNEILSISAM LSVPNCFIRP 101: RGEAQKAADE AKSSFAHIDG DHLTLLNLFH AFLQNNQDPN WCCTKFINYR AMKSAVSVRE QLVRIMLRFQ IKLCSPDFNS RDYYVNIRKA LLAGYFMQVA 201: HLERTGHYLT FRDKDDQVVH LHPSNCLDHK PEWVVYNEYV FTSRNFIRTV THIRGEWLVD VAPHYYKLAN FPSSEAKRVL ERHYKKRKLS EERSCKLYSN 301: S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)