AT5G14890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.530 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NHL domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NHL domain-containing protein; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2211 Blast hits to 1172 proteins in 193 species: Archae - 21; Bacteria - 928; Metazoa - 143; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4818056..4821534 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85520.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||
| Length | 754 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKNANLLIL FMIFMFFFCG LSSVSAKPPP VKIVSGLVTN VASILWKWLW SLQTSTTTTT TTKSGVSSRS MVKYESGYNM ETVFDGSKLG IEPYAIEVSP 101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES 201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ 301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT 401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ LPGLTAYCTD LTSYTMRSDH 501: LIFNKSTGSI SVHISKTDGQ YEREIEDEEE EGDFLQEKEK IRVRVAEKQR GRRIRRIQIQ ALYSSLSLSL NLYDLSQNQS HCFMGLESFP ISEMDATDEM 601: HEAMFAKRGC CFILPCLGSS QPSGPNGSVW WQRIRTVDKL EPDERWWVSG WMKMREWSEI VAGPKWKTFI RRFGRNHCCN GGIDGGCNRP EHVSFRYDSW 701: SYSLNFDDGK QTGHFEDEFP YRDYSMRFAA PSLPVSTKCS IDFDNDNHAP SLFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)