AT5G14740.4
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.906 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : carbonic anhydrase 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.3); Has 5114 Blast hits to 5097 proteins in 1529 species: Archae - 36; Bacteria - 3948; Metazoa - 60; Fungi - 213; Plants - 357; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:4758257..4762382 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36487.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 330 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPFWTTVSR NGSSDSETTL QSASKATKQY KYPSLRPSHR LSLLFLFPFH LSANGACFRC TCFSHFKLEL RRMGNESYED AIEALKKLLI EKDDLKDVAA 101: AKVKKITAEL QAASSSDSKS FDPVERIKEG FVTFKKEKYE TNPALYGELA KGQSPKYMVF ACSDSRVCPS HVLDFHPGDA FVVRNIANMV PPFDKVKYAG 201: VGAAIEYAVL HLKVENIVVI GHSACGGIKG LMSFPLDGNN STDFIEDWVK ICLPAKSKVL AESESSAFED QCGRCERAVN VSLANLLTYP FVREGVVKGT 301: LALKGGYYDF VNGSFELWEL QFGISPVHSI |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)