AT5G14510.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G12710.1); Has 1353 Blast hits to 1188 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 195; Plants - 1036; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:4678125..4679194 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35652.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEIVVESLL SGNRESQIEA AIELTNLSRK QRQKLAEREI ISPLLSMLQS QDCITTEVAL SALLSLAFGS ERNKVRIVKS GAVPTLLEIL QSETKMVVLE 101: LAMAFLLILS SCNKNKVKMA STRLVQLLVG LIGLDRLTIQ AKVDGIATLQ NLSTLHQIVP LVIASGAPYA LLQVINFCDK SSELADKAVA LLENIISHSP 201: ESVSSIGGAI GVLVEAIEEG SAQCKEHAVG ILLGICNNDR ETNRGMILRE GVMPGLLQVS VDGTRRAKEM ARELLLLLRD CSGYVIKNKQ SKIEIVEQIM 301: REIDQEGERI PGTMLKLVEE MISKLST |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)