AT5G14280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding storekeeper protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G27270.1); Has 335 Blast hits to 330 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 315; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4609123..4611444 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64132.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPTELGFS SPGGGGDDSD DNPPQKRTSK RTASETATEE ETKKKKKKKT KHNTKMASPP SNRIWNEEDE LSILKGLVDF RAKTGLESKI DWDAFYCYVK 101: GSIHVKVSKC QLMSKTRKLK KKFLDQMEKI DQGNDPHFTR SSETEAFGYS MMIWRKIDAE YTNGVMDKAH QSESGEEVFE EDEEVALIDK GAAKSGKSPH 201: EAVVVVDKIT TKKNGTAGKE SDDDDDDVLC AVRDAFETTM MSQGLSDYQK KLQLEKLMNL GTGKRRELSN EWKALCVEEL KLNINKLRFS AKLAEAANDD 301: YSSSSSSSIV SWVEIPISMS INIGEISIPD LPIFFSMFLT IYLIAYFIVF RNWKPQIRPE ASSCLISIFH GSPAVFLATR AVFSSSERSF ASANTAAQNT 401: VLDFSVAYFL TDLFHYIVFN PNDVLFIGHH VATLFVFLTC RFLVFHGACA ILGLLILAEV TSACQNAWTL AGARKNDPES RLAVKVYDLL SPPFYAFYSI 501: VRGVLGPLFF GKMVAFYARG GAHGVIPNWL WISWAIVVGI AITVSILWIW NLWIELFSER KANKIRVDKK IR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)