AT5G13480.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FY; FUNCTIONS IN: protein binding; INVOLVED IN: mRNA processing, regulation of flower development, embryo development ending in seed dormancy; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4326638..4331506 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73213.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||
| Length | 653 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRQSSASST NINPDYHHPS GPFDPNVDSF GAKRMRKHTQ RRAVDYTSTV VRYIQFNELI LYMELKVESV YSIYVFVQAR TWQRDSRDRT TLQPTPAAAV 101: DMLPTVAYSD NPSTSFAAKF VHASLNKNRC SINRVLWTPS GRRLITGSQS GEFTLWNGQS FNFEMILQAH DQPIRSMVWS HNENYMVSGD DGGTLKYWQN 201: NMNNVKANKT AHKESIRDLS FCKTDLKFCS CSDDTTVKVW DFTKCVDESS LTGHGWDVKS VDWHPTKSLL VSGGKDQLVK LWDTRSGREL CSLHGHKNIV 301: LSVKWNQNGN WLLTASKDQI IKLYDIRTMK ELQSFRGHTK DVTSLAWHPC HEEYFVSGSS DGSICHWIVG HENPQIEIPN AHDNSVWDLA WHPIGYLLCS 401: GSNDHTTKFW CRNRPADNPR DVLMQNQGYN EQGFGRQPDN FQPSEASPIP GAFVPGLTRN EGTIPGIGIA MPFDASSQGD HKQPLPGSMA LGAPPLPPGP 501: HPSLLGSGQQ QGYQQQQQHQ GHPQQMLPMP NMPHHQLPPS SHMPLHPHHL PRPMQMPPHG HMPPPSMPMS HQMPGSMGMQ GGMNPQMSQS HFMGAPSGVF 601: QGQPNSGGPQ MYPQGRGGFN RPQMIPGYNN PFQQQQQPPL PPGPPPNNNQ QHQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)