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AT5G13380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1506 Blast hits to 1424 proteins in 238 species: Archae - 0; Bacteria - 490; Metazoa - 52; Fungi - 2; Plants - 670; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHE6eggNOG:ENOG410XQH0EMBL:CP002688EnsemblPlants:AT5G13380
EnsemblPlants:AT5G13380.1entrez:831179GeneID:831179Gramene:AT5G13380.1
hmmpanther:PTHR31901InParanoid:F4K2J6InterPro:IPR004993iPTMnet:F4K2J6
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G13380
KO:K14487OMA:ICTERERPANTHER:PTHR31901PaxDb:F4K2J6
Pfam:PF03321PRIDE:F4K2J6ProteinModelPortal:F4K2J6Proteomes:UP000006548
RefSeq:NP_196842.2SMR:F4K2J6STRING:3702.AT5G13380.1TAIR:AT5G13380
UniGene:At.50453UniProt:F4K2J6
Coordinates (TAIR10) chr5:+:4289912..4292355
Molecular Weight (calculated) 70278.60 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.10
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPFICTERE RDGSDPIHCS QRKDNRKAAI MLPKFDPTNP LATMSVLEDV TTNVKKIQDS LLEAILSRNS QTEYLRGFLT GQLDKQSFKK NVPIVTYEDI
101: KPHIDRIANG EPSDLICDRP ISLLLATTGT SGGIPKLIPL TAEELEQRIL FGFLYVPLVF KHIEGLTQGK SLMFYFVTRE SETVSGLMVR FMITCVLKSV
201: NPTNSFLWDR VQISPHAIAI CEDTNQGMYC QLLCGLLQRE HVARLGAPYA SSFLKVIKFL EDHWPELCSN IRTGRLSDWI TDAQCVSGIG NFLTAPDPDL
301: ANLIEQECSK TSWEAILSRI WPKAKCIEAV ITGTMAQYIP LLEFYGGGLP LVSSWYGSSE CFIGINLNPL SKPSDVSYTI IPSMGYFEFI EVVKDRQEAG
401: HVPADPVVVD LVDVKIGHDY ELLVTTFSGL YRYRLGDVLR VTGFHNNAPQ FYFVGRQNVV LSIDLSKTYE EDLLKAVKNA SLLLEPHDLM LMDFTSRVDL
501: SSLPGHYVLY WELGNKFKNA KLDPKSNVLE ECCLTVEESL DSIYREGRKN DKIIGPLEIK VVKPGAFDEL MNFFLSRGSS VSQYKTPRSV THEEALNILE
601: SNVVSEFLSR KTPSWELHEL HSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)