AT5G13350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4279884..4282287 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66378.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 587 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPKFDLTDP KASLSLLEDV TTNVTQIQDS ILEAVLSRNA HTEYLKGFLN GQVDKQTFKK NVPIVTYEDI KPYINRIANG EASDLICDRP ISLLVMSSGT 101: TAGIQNLIPL TTEDGEQRIM FGSLYRSLLY KYVEGIREGK SLTFYFVNPE RETASGILIR TMITCILKSV NKTNSSLWDR LQISPHEIST CEDTTQSMYC 201: QLLCGLLQRD NVARLGAPFA SVFIRVIKYL EGHWQELCSN IRTGRLSDWI TDPQCVSGIS KFLTAPNPDL ASLIEQECSK TSWEAIVKRL WPKAKCVEAV 301: VTGSMAQYIP LLEFYGGGLP LISSWYGSSE CFMGVNVNPL CKPSDVSYTI IPSMAYFEFL EVKKDQQEAG LDPIENHVVV DLVDVKIGHD YEPVVTTFSG 401: LYRYRVGDLL RVTGFYNNSP HFRFVGRQKV VLSLHMANTY EEDLLKAVTN AKLLLEPHDL MLMEFTSRVD SSSFVGHYVL YWELGSKVKD AKLEPNRDVM 501: EECCFTVEKY LDPLYRQERR KDKNIGPLEI KVVKPGAFDE LMNFFLSRGS SVSQYKTPRS VKTEEAVKIL EANVVSEFLS QETPPWG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)