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AT5G12880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUNAeggNOG:ENOG41106QJEMBL:AL353013EMBL:BT010783
EMBL:BT011260EMBL:CP002688EnsemblPlants:AT5G12880EnsemblPlants:AT5G12880.1
entrez:831128GeneID:831128Gramene:AT5G12880.1KEGG:ath:AT5G12880
OMA:HYKYKAPPIR:T49902Proteomes:UP000006548RefSeq:NP_196792.1
STRING:3702.AT5G12880.1TAIR:AT5G12880TMHMM:TMhelixUniGene:At.32135
UniProt:Q9LXV1
Coordinates (TAIR10) chr5:-:4068714..4068935
Molecular Weight (calculated) 8305.04 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.20
Length 73 amino acids
Sequence (TAIR10)
(BLAST)
1: MRRSWPTRLI LLMVLTVVIT MIAAAYGYSS VSSSKHKFPH YKYKAPSPPT TYSPYRYFSP PPVTDSDSAA YVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)