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AT5G12870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 46
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 46 (MYB46); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 83 (TAIR:AT3G08500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16405eggNOG:COG5147eggNOG:KOG0048EMBL:AF062884
EMBL:AL353013EMBL:AY519621EMBL:BT000455EMBL:BT002549
EMBL:CP002688EnsemblPlants:AT5G12870EnsemblPlants:AT5G12870.1entrez:831127
Gene3D:1.10.10.60GeneID:831127Genevisible:Q9LXV2GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009751
GO:GO:0009834GO:GO:0045893GO:GO:0050832GO:GO:1901348
GO:GO:2000652Gramene:AT5G12870.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF640
HOGENOM:HOG000237600InParanoid:Q9LXV2InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G12870KO:K09422OMA:QLMNTEV
PaxDb:Q9LXV2Pfam:PF00249Pfam:Q9LXV2Pfscan:PS51294
PhylomeDB:Q9LXV2PIR:T49901PIR:T51656PRIDE:Q9LXV2
PRO:PR:Q9LXV2PROSITE:PS51294ProteinModelPortal:Q9LXV2Proteomes:UP000006548
RefSeq:NP_196791.1SMART:SM00717SMR:Q9LXV2STRING:3702.AT5G12870.1
SUPFAM:SSF46689TAIR:AT5G12870tair10-symbols:ATMYB46tair10-symbols:MYB46
UniGene:At.5283UniProt:Q9LXV2
Coordinates (TAIR10) chr5:-:4062939..4064939
Molecular Weight (calculated) 31543.00 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.64
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)