AT5G12480.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.981 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : calmodulin-domain protein kinase 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
calmodulin-domain protein kinase 7 (CPK7); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 19 (TAIR:AT5G19450.2); Has 104543 Blast hits to 101042 proteins in 3590 species: Archae - 138; Bacteria - 12396; Metazoa - 40131; Fungi - 14132; Plants - 17107; Viruses - 370; Other Eukaryotes - 20269 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:4047817..4050035 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49569.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNCCGNPSS ATNQSKQGKP KNKNNPFYSN EYATTDRSGA GFKLSVLKDP TGHDISLQGH YTERAAAAVM KTIVEVVQIC HKQGVMHRDL KPENFLFANK 101: KETSALKAID FGLSVFFKPG EQFNEIVGSP YYMAPEVLRR NYGPEIDVWS AGVILYILLC GVPPFWAETE QGVAQAIIRS VIDFKRDPWP RVSDSAKDLV 201: RKMLEPDPKK RLTAAQVLEH TWILNAKKAP NVSLGETVKA RLKQFSVMNK LKKRALRVIA EHLSVEEAAG IKEAFEMMDV NKRGKINLEE LKYGLQKAGQ 301: QIADTDLQIL MEATDVDGDG TLNYSEFVAV SVHLKKMAND EHLHKAFNFF DQNQSGYIEI DELREALNDE LDNTSSEEVI AAIMQDVDTD KDGRISYEEF 401: VAMMKAGTDW RKASRQYSRE RFNSLSLKLM RDGSLQLEGE T |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)