AT5G12460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT2G37730.1); Has 562 Blast hits to 553 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 170; Plants - 273; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4043057..4044583 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 50860.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHNLFAPLD LSFSSSSSSS SSSVSLSLQI TREPPTNISH LFFVIVGSTK TWRYRRGYIE PWWRPNITKG YVFLERPPGP DLLPWPQQSP PFSVNKESFI 101: TNKFKTQIRL FYSLQESFKK ASKETRWFVI GDDDTLFFLD NLVKALDRYN HKKHYYVGMN SENVWSNAIF AFDMGYGGGG YALSYPTVVT LLSNMEECIK 201: RYLGVYSDLL SFRCLADLGI DLTLEKGMHQ NDLHGDISGL LSAHPQSPLI SLHHFDVIDP IFPGMNRQQS VNHLMETAKT DQSRVLQQTI CYQRGYNWSV 301: SVSWGYSVHI YQSIYPRSHL KRPLETFRPW KDVRIPAYGF NTRRVTNDPC EMPRQFFFDS VVEDKNQSLV TTIYKMKMER RLPPCLLNGN HSSRNITQVR 401: VIATTMHKMV EGIECCDVQN VNSTEILEVK IRDCHIDEAL A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)