AT5G12370.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : exocyst complex component sec10 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component sec10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 527 Blast hits to 483 proteins in 172 species: Archae - 0; Bacteria - 6; Metazoa - 178; Fungi - 247; Plants - 59; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:4003002..4008445 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89699.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEGIRARGP RSSSVNSVPL ILDIEDFKGD FSFDALFGNL VNDLLPSFLD EEADSGDGHG NIAGVDGLTN GHLRGQSAPL SSAPFFPEVD GLLSLFKDAC 101: KELVDLRKQV DGRLNTLKKE VSTQDSKHRK TLTEIEKGVD GLFESFARLD GRISSVGQTA AKIGDHLQSA DAQRETASQT IDLIKYLMEF NGSPGDLMEL 201: SALFSDDSRV AEAASIAQKL RSFAEEDIGR QGASAAAGNA TPGRGLEVAV ANLQDYCNEL ENRLLSRFDA ASQRRDLSTM SECAKILSQF NRGTSAMQHY 301: VATRPMFIDV EVMNSDIRLV LGDHGSQPSP SNVARGLSAL FKEITDTVRK EAATITAVFP TPNEVMAILV QRVLEQRVTG ILDKILAKPS LMSPPPVQEG 401: GLLLYLRMLA VAYERTQELA KDLRAVGCGD LDVEDLTESL FSSHKDEYPE HERASLKQLY QAKMEELRAE SQQVSESSGT IGRSKGASIS SSLQQISVTV 501: VTDFVRWNEE AITRCTLFSS QPATLAANVK AIFTCLLDQV SVYITEGLER ARDSLSEAAA LRERFVLGRR VAAAAASAAE AAAAAGESSF KSFMVAVQRC 601: GSSVAIVQQY FANSISRLLL PVDGAHAASC EEMSTALSKA EAAAYKGLQQ CIETVMAEVD RLLSSEQKST DYRSTDDGIA SDHRPTNACI RVVAYLSRVL 701: ESAFTALEGL NKQAFLTELG NRLEKLLLTH WQKFTFNPSG GLRLKRDLNE YVGFVKSFGA PSVDEKFELL GIIANVFIVA PDSLPTLFEG SPSIRKDAQR 801: FIQLREDYKS AKLATKLSSL WPSLS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)