AT5G12280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.927 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3972014..3973636 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47284.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGTLSPDTP DTQFISLCYK LQIVEVVRSP LFSTSRPGGS RGRAMRSRLR LHKPIILGQM KFGESDFDVS YDLIFMLEKD NSNEAPAEPP REMRIHMDKI 101: ARVVARKGLR IERKIMNVSE YLAKNQDEGA QEPEAPATLK GDAQHYRRPF LLSDPAPKFP DYVLPEGYTI EDVDTIFLTA QIVGRYGEEF WLDLIKEVDN 201: KPQFEFLKPA DSKFDYFNRL SVVASEGLKR SEKLTSSRMA IVSKAFFYHL RRQNEKRELT HKEGAAKACT LFGALYAFVG PDGCFADIKD EDLPLLQHPS 301: AIKNILTKLQ PRMPPLGGES EEPEFDESVL VPEDQFLAQH PGSSTIMVSV PDPDDWKVVK ITVQSLSENV ASLKEKISGE IQFPTNKQKL RGKAGFLKDN 401: TSLAHYNVGA GEILTLSWW |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)