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AT5G11950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative lysine decarboxylase family protein
Curator
Summary (TAIR10)
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational
Description (TAIR10)
Putative lysine decarboxylase family protein; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4835 Blast hits to 4834 proteins in 1455 species: Archae - 28; Bacteria - 3320; Metazoa - 8; Fungi - 132; Plants - 375; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2546-MONOMERBioCyc:ARA:GQT-2547-MONOMERDNASU:831068EC:3.2.2.n1
eggNOG:COG1611eggNOG:ENOG410IRBVEMBL:AK220660EMBL:AK227652
EMBL:AL163812EMBL:BT006409EMBL:CP002688EnsemblPlants:AT5G11950
EnsemblPlants:AT5G11950.1EnsemblPlants:AT5G11950.2entrez:831068EvolutionaryTrace:Q84MC2
GeneID:831068Genevisible:Q84MC2GO:GO:0005634GO:GO:0005829
GO:GO:0009691GO:GO:0016799GO:GO:0042803Gramene:AT5G11950.1
Gramene:AT5G11950.2hmmpanther:PTHR31223hmmpanther:PTHR31223:SF4HOGENOM:HOG000156894
InterPro:IPR005269InterPro:IPR031100KEGG:ath:AT5G11950OMA:RFRTVCV
PaxDb:Q84MC2PDB:1YDHPDB:2Q4DPDBsum:1YDH
PDBsum:2Q4DPfam:PF03641Pfam:Q84MC2PhylomeDB:Q84MC2
PIR:T48554PRIDE:Q84MC2PRO:PR:Q84MC2ProteinModelPortal:Q84MC2
Proteomes:UP000006548RefSeq:NP_196756.2RefSeq:NP_974768.1SMR:Q84MC2
STRING:3702.AT5G11950.1SUPFAM:SSF102405TAIR:AT5G11950TIGRfam:TIGR00730
TIGRFAMs:TIGR00730UniGene:At.32192UniProt:Q84MC2
Coordinates (TAIR10) chr5:+:3855072..3856815
Molecular Weight (calculated) 23832.80 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.19
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDNQRSRFR KICVFCGSHS GHREVFSDAA IELGNELVKR KIDLVYGGGS VGLMGLISRR VYEGGLHVLG IIPKALMPIE ISGETVGDVR VVADMHERKA
101: AMAQEAEAFI ALPGGYGTME ELLEMITWSQ LGIHKKTVGL LNVDGYYNNL LALFDTGVEE GFIKPGARNI VVSAPTAKEL MEKMEEYTPS HMHVASHESW
201: KVEELGDYPG QENKPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)