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AT5G11510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 3r-4
Curator
Summary (TAIR10)
Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection.
Computational
Description (TAIR10)
myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF371975EMBL:AY519650
EMBL:CP002688EnsemblPlants:AT5G11510EnsemblPlants:AT5G11510.1entrez:831023
ExpressionAtlas:Q94FL9Gene3D:1.10.10.60GeneID:831023GO:GO:0003677
GO:GO:0003700GO:GO:0003713GO:GO:0006355GO:GO:0032875
Gramene:AT5G11510.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF599HOGENOM:HOG000244033
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930OMA:AMEVSIS
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q94FL9PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_568249.1SMART:SM00717SMR:Q94FL9
STRING:3702.AT5G11510.1SUPFAM:SSF46689TAIR:AT5G11510tair10-symbols:AtMYB3R4
tair10-symbols:MYB3R-4UniGene:At.5132UniProt:Q94FL9
Coordinates (TAIR10) chr5:+:3680452..3684684
Molecular Weight (calculated) 108242.00 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.77
Length 961 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAESSTPQE RIPKLRHGRT SGPARRSTRG QWTAEEDEIL RKAVHSFKGK NWKKIAEYFK DRTDVQCLHR WQKVLNPELV KGPWTKEEDE MIVQLIEKYG
101: PKKWSTIARF LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELLLIRAHQI YGNRWAELTK FLPGRSDNGI KNHWHSSVKK KLDSYMSSGL LDQYQAMPLA
201: PYERSSTLQS TFMQSNIDGN GCLNGQAENE IDSRQNSSMV GCSLSARDFQ NGTINIGHDF HPCGNSQENE QTAYHSEQFY YPELEDISVS ISEVSYDMED
301: CSQFPDHNVS TSPSQDYQFD FQELSDISLE MRHNMSEIPM PYTKESKEST LGAPNSTLNI DVATYTNSAN VLTPETECCR VLFPDQESEG HSVSRSLTQE
401: PNEFNQVDRR DPILYSSASD RQISEATKSP TQSSSSRFTA TAASGKGTLR PAPLIISPDK YSKKSSGLIC HPFEVEPKCT TNGNGSFICI GDPSSSTCVD
501: EGTNNSSEED QSYHVNDPKK LVPVNDFASL AEDRPHSLPK HEPNMTNEQH HEDMGASSSL GFPSFDLPVF NCDLLQSKND PLHDYSPLGI RKLLMSTMTC
601: MSPLRLWESP TGKKTLVGAQ SILRKRTRDL LTPLSEKRSD KKLEIDIAAS LAKDFSRLDV MFDETENRQS NFGNSTGVIH GDRENHFHIL NGDGEEWSGK
701: PSSLFSHRMP EETMHIRKSL EKVDQICMEA NVREKDDSEQ DVENVEFFSG ILSEHNTGKP VLSTPGQSVT KAEKAQVSTP RNQLQRTLMA TSNKEHHSPS
801: SVCLVINSPS RARNKEGHLV DNGTSNENFS IFCGTPFRRG LESPSAWKSP FYINSLLPSP RFDTDLTIED MGYIFSPGER SYESIGVMTQ INEHTSAFAA
901: FADAMEVSIS PTNDDARQKK ELDKENNDPL LAERRVLDFN DCESPIKATE EVSSYLLKGC R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)