AT5G11430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SPOC domain / Transcription elongation factor S-II protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:3648469..3652256 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96434.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 873 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMAEINGSM QLVGKHKSLP QTTLGGGSAS EAPNKQVRPW LQQLSPASNG ILHIPTKILS QETLHSLMHG KKATQTESAP QKPAKPVVNK KQHVPPPQRS 101: VKAMEEVNES VRSKMRESLA SALALVKKDD DSPKGKENIG TVETPVITQE NTQSFQPASP ASISVPVGEG TMSEMPTSVE SSVQKDSEIP VDIMMEDVIK 201: FNVLKSQYDE VFPRDNVPFT DIIFPNDDLL HGNELSWDLE VSDLGETKDY GTGGEKSFQD PKLLASKIEM ELYKLFGGVN KKYRERGRSL LFNLKDKNNP 301: ELRERVMSEE ISAERLCSMT AEELASKELS QWRQAKAEEM AKMVVLQDTD IDVRSLVRKT HKGEFQVEIE PVDRGTVDVS GGIMSRSKRR PRAKSHSVKT 401: ALKDEAAKAD NEKSRSTPPS TEEIDPMQGL GIDDELKDVE FLPPIVSLDE FMESLDSEPP FESPHGNSEM QVSPSEKSDS EAGSDSKSPK GSPKELSDKS 501: LPEAKPEKID EVTPEFDANV KVDDDISRVE KAAALSDDKG ERAWDGILQL SMSSVVPVAG IFKSGEKAET SEWPAMVEVK GRVRLSGFGK FIQELPKSRT 601: RALMVMYLAY KDGISESQRG SLIEVIDSYV ADQRVGYAEP ASGVELYLCP TRGETLDLLN KVISQEQLDE VKSLDIGLVG VVVWRRAVVP KPGSGSKRQH 701: SFSSSIGSKT SVLPVNKKQR VHVTEKPLVV ASMRNHHHGY VKHDTAADDD VPPGFGPVAS RDEDDLPEFN FNSSVVPVSS PQPLPAQSKS LDQVRKLIHK 801: YGKSASTYDD DDDEDDIPEW QPHVPSHQLP PPPPPPLGFR PEVFRPPQDG WYDNQNGGSG QHYERNQSRN RGF |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)