AT5G11240.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 8385 Blast hits to 5100 proteins in 391 species: Archae - 41; Bacteria - 3255; Metazoa - 1724; Fungi - 1723; Plants - 553; Viruses - 0; Other Eukaryotes - 1089 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:3582949..3586782 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66887.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLVNIKDVL TSFSPALDYL ALSTGDGRIK IWDTVKGQVQ TEFADIASTE ETNIYTKVGK GHLSVDYTCM KWLSLEKKKK RKLGTSVLVL GTGGGDVLAL 101: DVASGQLKWR ISDCHPGGVN AVSSSAKASC IYSGGADGMV CQIDPHSGNL IRKFKASTKT VSSLCVSPDG KILVTASTQL KTFNCSDLKK IQKFTGHPGV 201: VRCVAFTEDG KYVLSSAVGE RYIAVWKTDG AKKQSASCVL ALEHPPVFVD SWGETNEKGL YVLAISEIGV CYFWYGSNVE ELCNATPTKV ALATADSSLK 301: PYKSSLPLIF AAKLQGILKP GSAHAFIASG LLVKPSFQKM VLQFGNDLVL NASKDGILLP ITQSVSKSSK RQGVQNKVTT LDRAHAEDAL LPIARVADLH 401: EKKSVQLHSS DKDTYMVDQS HADHVETFSM EDKLRSLGIL GGTDEHKNLS YASIIDGTDL KAYLPPKKLK SAVLSMEPST AFKTLEALAA MWQTRACGGR 501: HLLPWIYSIM VNHSHYIMSQ EPKNQQLLNT LVKITKSRGT ALQQLLQLSG RLQLVTAQIN KAAGSQTQIT AHDQEIDESE DEEEDVEDHF YGENDNESDL 601: SSDDGKDKDD SLMET |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)