AT5G11180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.832 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate receptor 2.6 | ||||||||||||
| Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family | ||||||||||||
| Computational Description (TAIR10) |
glutamate receptor 2.6 (GLR2.6); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.5 (TAIR:AT5G11210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3557261..3561575 | ||||||||||||
| Molecular Weight (calculated) | 101717.00 Da | ||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||
| Length | 906 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLFNHLLSR ALPLWLLFFI NFLVLLGKSQ QEVLQVQVGI VLDTNATLAA LSLRAINMSL SEFYNTHNGF KTRIVLNIRD SKRTVVGAAA SALYLIKKRE 101: VVAIIGPGNS MQAPFLINLG NQSQVPIISF SASSPVLDSL RSPYFIRATH DDSSQVHAIS AIIESFRWRE VVPIYADNEF GEGILPYLVD AFQEINVRIR 201: YRSAISVHST DDLVKKELYK LMTMPTRVFI VHMLPDLGSR LFSIAKEIGM MTKGYVWIVT NGIADQMSVM GESSLENMHG VLGVKTYFSR SKELMYLETR 301: WRKRFGGEEL NNFECWGYDT ATALAMSIEE ISSNVNMSFS QTKRNTSRDD TGTDLDDLSF ALSGPKLLQA LATVSFKGVA GRFQLKNGKL EATTFKIVNI 401: EESGERTVGF WKSKVGLVKS LRVNQTGIKI SHSSHRLRPI IWPGDTIFVP KGWEFPTNAK KLRIAVPKKD GFNNFVEVTK DANTNAPTIT GFCIDVFDTA 501: MRQMPYAVPY EYIPFETPDG KPRGSYDEMV YHVFLGEFDG AVGDTTILAN RSTYVDFALP YSETGIVVVV PVKDEREKGK WVFLKPLTRE LWFLTAASFL 601: YIGIMSYTAT LTSMLTVQEL RPTVRHMDDL RNSGVNIGYQ TGSFTFERLK QMGYKESRLK TYDTPQEMHE LFLKKSSNGG IDAAFDEVAY VKLFMAKYCS 701: KYTIIEPTFK ADGFGFAFPL GSPLVPDLSR QILNITEGET MKAIENKWLL GEKHCLDSTT SDSPIRLDHH SFEALFTIVF VVSMLLLLAM LVCRRYRQES 801: KSGEINANNS PTDGNMRAPP NQPTDDNMRA PTSPPIDDQV LEPPGPALNE ADDQDQLLND EVNVGDRNEV DIIVEVDPTL VHRRNLITSK TIPTRRAALF 901: SRIKSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)