AT5G10950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3459557..3461632 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43622.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.46 | ||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGSRKRSSA KNRLVSSSTR SSGKDKVSDA RKYGEALVGS RIRVWWPMDS KFYKGVVDSY VSSKKKHRVF YEDGDKETLD LKKERWELIE EDDAESESDE 101: ISLQEESAGE SSEGTPEPPK GKGKASLKGR TDEAMPKKKQ KIDSSSKSKA KEVEKKASKP ETEKNGKMGD IGGKIVAAAS RMSERFRSKG NVDQKETSKA 201: SKKPKMSSKL TKRKHTDDQD EDEEAGDDID TSSEEAKPKV LKSCNSNADE VAENSSDEDE PKVLKTNNSK ADKDEDEEEN ETSDDEAEPK ALKLSNSNSD 301: NGENNSSDDE KEITISKITS KKIKSNTADE ENGDNEDGEK AVDEMSDGEP LVSFLKKSPE GIDAKRKKMK GKKEEEEEEG EENAGKDTKA EEASS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)