AT5G10880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA synthetase-related / tRNA ligase-related | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G62120.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3432693..3433867 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34584.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKETRLGIT AKKDEDFGKW YSEACRFGEL VEYYESVKGC YILKPSGISD EYLERYTNTT LKGLLQRLLG LQELVDKRTQ GPPFEAACMT HGDDKGLVFP 101: PKVAPVQVVV IHVPIKGAAD YQELCDACEA VESTLLGAGI RAEADIRDNY SCGWKYADQE LTGVPLRIET GPRDLANDQV RIVTRDNGAK MDVKRGDLIE 201: QVKDLLEKIQ SNLYDVAKRK VEECTQKVET WDEFVEALSQ KKLILAPWCD KVEVEKDVKR RTRGDETGGG GGGAKTLCTP LEQPELGEET LCFASGKPAK 301: KWSYWGRSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)