AT5G10840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endomembrane protein 70 protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G25100.1); Has 1652 Blast hits to 1622 proteins in 358 species: Archae - 0; Bacteria - 81; Metazoa - 616; Fungi - 232; Plants - 453; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3424910..3427797 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74471.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMEFLRSSR RILESSGCAI ALIFLLFIHG AHSFYLPGVA PQDFEKGDEL KVKVNKLTSI KTQLPYSYYS LPFCRPSKIV DSTENLGEVL RGDRIENAPY 101: SFKMREAQMC NILGRVTLDA KTAKAFKEKI DDEYRVNMIL DNLPLVVPIE RVDQGSPSVV YQLGYHVGLK GQYEGSKEQK FFMHNHLAFT VRYHRDIQTD 201: AARIVGFEVK PYSVKHEYEG EWSEKTRLTT CDPHTKRLVV SSATPQEVEQ KKEIIFTYDV DFQESEVKWA SRWDTYLLMS DNQIHWFSIV NSLMIVLFLS 301: GMVAMIMLRT LYRDISRYNE LETQEEAQEE TGWKLVHGDV FRLPTNSDLL CVYVGTGVQC LGMVFVTMIF AMLGFLSPSN RGGLMTAMLL LWVFMGLFAG 401: YASSRLYKMF KGTEWKRIAF RTAFLFPAVV SAIFFVLNAL IWGQKSSGAV PFGTMFALIF LWFGISVPLV FVGGYIGFKK PAADDPVKTN KIPRQIPEQA 501: WYMNPVFSIL IGGILPFGAV FIELFFILTS IWLNQFYYIF GFLFLVFVIL IVTCAEITVV LCYFQLCSED YLWWWRSYLT SGSSALYLFL YATFYFFTKL 601: QITKLVSAML YFGYMLIASY AFFVLTGTIG FYACLWFTRL IYSSVKID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)