AT5G10510.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AINTEGUMENTA-like 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AINTEGUMENTA-like 6 (AIL6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 7 (TAIR:AT5G65510.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3315991..3320008 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67697.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD 101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG 201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR 301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ 401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ 501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP 601: NQSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)