AT5G10420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.877 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G65380.1); Has 8713 Blast hits to 8589 proteins in 1911 species: Archae - 113; Bacteria - 6015; Metazoa - 140; Fungi - 329; Plants - 1348; Viruses - 0; Other Eukaryotes - 768 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3273578..3276490 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53592.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.33 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.75 | ||||||||||||||||||||||||||||||||||||||||
| Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKKSGGTKA IEEATVPLLE CHNAAEEGGG MKREIWIETK KIWYIVGPSI FTGLATYSIL IITQAFAGHL GDLELAAISI INNFTLGFNY GLLLGMASAL 101: ETLCGQAFGA REYYMLGVYM QRYWIILFLC CILLLPMYLF ATPILKFIGQ SDDIAELTGT IALWVIPVHF AFAFFFPLNR FLQCQLKNKV IAISAGVSLA 201: VHILVCWFFV YGYKLGIIGT MASVNVPWWL NIFILFLYST RGGCTLTWTG FSSEAFTGLL ELTKLSASSG IMLCLENWYY KILMLMTGNL VNAKIAVDSL 301: SICMSVNGWE MMIPLAFFAG TGVRVANELG AGNGKGARFA TIVSITLSLM IGLFFTVIIV IFHDQIGSIF SSSEAVLNAV DNLSVLLAFT VLLNSVQPVL 401: SGVAVGSGWQ SYVAYINLGC YYLIGLPFGL TMGWIFKFGV KGIWAGMIFG GTAIQTLILI IITTRCDWDN EAHKSSVRIK KWLVSDAGN |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)