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AT5G10200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.848
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (TAIR:AT5G43120.1); Has 2055 Blast hits to 1944 proteins in 240 species: Archae - 0; Bacteria - 3; Metazoa - 1049; Fungi - 393; Plants - 364; Viruses - 4; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGDQeggNOG:ENOG410XSBQEMBL:AK229726EMBL:CP002688
EnsemblPlants:AT5G10200EnsemblPlants:AT5G10200.1entrez:830884Gene3D:1.25.10.10
Gene3D:1.25.40.10GeneID:830884GO:GO:0005886Gramene:AT5G10200.1
hmmpanther:PTHR22904hmmpanther:PTHR22904:SF379HOGENOM:HOG000030462InterPro:IPR011989
InterPro:IPR011990InterPro:IPR016024KEGG:ath:AT5G10200OMA:TEWKNDG
Pfam:PF13414PhylomeDB:Q0WMT6Proteomes:UP000006548RefSeq:NP_196582.2
SMR:Q0WMT6SUPFAM:SSF48371SUPFAM:SSF48452TAIR:AT5G10200
UniGene:At.54799UniProt:Q0WMT6
Coordinates (TAIR10) chr5:+:3202378..3204367
Molecular Weight (calculated) 71257.10 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.40
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKASSQECP YPGCFFCVMK EGNPSKRRSC ILKFFRDLPS QDDDGQVLPI SGLWNTAMAH PNDPEFIELG IFECMSALIW KGLKNRRWLS HDQNIYIPYY
101: AAHIIGSYTM NMEEFAERAV EAGVIPPLVE LLRGRLTWVE QRVAVRALGH LATYPSTFPA VADHGEILEL AIQLAMSSLE IVYSHFYQYP DRRLSYHCDL
201: LTRGMGGVEM ESRKAEEWAS QLQCWSLQLI NCFAFKPEFL PTLCKPEFLV NLPVMWGGLV NENSPAGIGL LRTICQHKLG RGPVSACAGM IEALCNIARS
301: SDDWQYMAIE CLLWLLQDPN TSHKVIDKAV PTLVDLAEIT NLGDHKKLGD SIVSVLQECS SMGNRSRELI EETVNSRQRL KWEKSMPKED LHIKQAAALV
401: VKLEGNSLFS SGDIAGAAEK YSEALSLCPM RSKKERVVLY SNRAQCHLLL QQPLVAISDA TRALCLHNPV NRHAKSLWRR AQAYDMLGLA KESLLDAILF
501: INECSQSNDP DLSMRQNKVP DYAERLVKKQ MRAAWLFKEA ALKHGGVHRK GEEREVYGNE TDDSEWETAS ESDIGDDGRD HMGLDDEEEE EEDEGHGEKW
601: KNRDKSSEKN EKTSAKGMRH GYSIKLAEDE I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)