AT5G10100.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3158019..3160107 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38780.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSIIPNNNN NNNNSSSQKL PPCLISISKK KLLKNIDIIN GGGQRINAWV DSMRASSPTH LKSLPSSIST QQQLNSWIMQ HPSALEKFEQ IMEASRGKQI 101: VMFLDYDGTL SPIVDDPDKA FMSSKMRRTV KKLAKCFPTA IVTGRCIDKV YNFVKLAELY YAGSHGMDIK GPAKGFSRHK RVKQSLLYQP ANDYLPMIDE 201: VYRQLLEKTK STPGAKVENH KFCASVHFRC VDEKKWSELV LQVRSVLKKF PTLQLTQGRK VFEIRPMIEW DKGKALEFLL ESLGFGNTNN VFPVYIGDDR 301: TDEDAFKMLR DRGEGFGILV SKFPKDTDAS YSLQDPSEAS LNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)