AT5G09950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 58090 Blast hits to 13690 proteins in 227 species: Archae - 0; Bacteria - 7; Metazoa - 25; Fungi - 46; Plants - 57493; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3102877..3105864 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110782.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 995 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNCVPLSFV QSCVGHRGAA RFFHSRLYKN RLDKDVYLCN NLINAYLETG DSVSARKVFD EMPLRNCVSW ACIVSGYSRN GEHKEALVFL RDMVKEGIFS 101: NQYAFVSVLR ACQEIGSVGI LFGRQIHGLM FKLSYAVDAV VSNVLISMYW KCIGSVGYAL CAFGDIEVKN SVSWNSIISV YSQAGDQRSA FRIFSSMQYD 201: GSRPTEYTFG SLVTTACSLT EPDVRLLEQI MCTIQKSGLL TDLFVGSGLV SAFAKSGSLS YARKVFNQME TRNAVTLNGL MVGLVRQKWG EEATKLFMDM 301: NSMIDVSPES YVILLSSFPE YSLAEEVGLK KGREVHGHVI TTGLVDFMVG IGNGLVNMYA KCGSIADARR VFYFMTDKDS VSWNSMITGL DQNGCFIEAV 401: ERYKSMRRHD ILPGSFTLIS SLSSCASLKW AKLGQQIHGE SLKLGIDLNV SVSNALMTLY AETGYLNECR KIFSSMPEHD QVSWNSIIGA LARSERSLPE 501: AVVCFLNAQR AGQKLNRITF SSVLSAVSSL SFGELGKQIH GLALKNNIAD EATTENALIA CYGKCGEMDG CEKIFSRMAE RRDNVTWNSM ISGYIHNELL 601: AKALDLVWFM LQTGQRLDSF MYATVLSAFA SVATLERGME VHACSVRACL ESDVVVGSAL VDMYSKCGRL DYALRFFNTM PVRNSYSWNS MISGYARHGQ 701: GEEALKLFET MKLDGQTPPD HVTFVGVLSA CSHAGLLEEG FKHFESMSDS YGLAPRIEHF SCMADVLGRA GELDKLEDFI EKMPMKPNVL IWRTVLGACC 801: RANGRKAELG KKAAEMLFQL EPENAVNYVL LGNMYAAGGR WEDLVKARKK MKDADVKKEA GYSWVTMKDG VHMFVAGDKS HPDADVIYKK LKELNRKMRD 901: AGYVPQTGFA LYDLEQENKE EILSYHSEKL AVAFVLAAQR SSTLPIRIMK NLRVCGDCHS AFKYISKIEG RQIILRDSNR FHHFQDGACS CSDFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)