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AT5G09940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1635)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1635); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1635) (TAIR:AT2G28690.1); Has 87 Blast hits to 87 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:830855eggNOG:ENOG410JVMCeggNOG:ENOG41105SNEMBL:AB016893
EMBL:CP002688EnsemblPlants:AT5G09940EnsemblPlants:AT5G09940.1entrez:830855
GeneID:830855Gramene:AT5G09940.1hmmpanther:PTHR33431hmmpanther:PTHR33431:SF2
HOGENOM:HOG000152486InterPro:IPR012862KEGG:ath:AT5G09940OMA:PENGKFQ
Pfam:PF07795PhylomeDB:Q9FIB3Proteomes:UP000006548RefSeq:NP_196556.1
TAIR:AT5G09940UniGene:At.54794UniProt:Q9FIB3
Coordinates (TAIR10) chr5:+:3101192..3101833
Molecular Weight (calculated) 24477.80 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.53
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MYQETKQFYH LWLLAVQERD EAREHLKQSL VELSRLQECF NTILLSEDQQ IPHYSYSETT DETPDHQKLY SYNNFSNESP SRFSSASSID LVSNSTVYSS
101: PETYDSDCYS LRTLQMGFAF EEKKDFETLV LENIGLGRML PENGKFQQAI IEAGSLVDSL FITGPIPKWR NPPVQMLSQR PLLSHSIGKW NYGGQGIINR
201: SFSGKMPRLS LMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)