AT5G09700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3003720..3005566 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57206.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVQAGYEPA DHSGFQPYGP NLRLVHTVHS QLGLGSPDLR VCFRYIVSDC DSLGILYGSQ HYTKTPEEAA AKSILAGLDL NCGSFLGNHT ENAVKKGLID 101: EAAINKAISN NFATLMRLGF FDGNPKNQPY GGLGPKDVCT VENRELAVET ARQGIVLLKN SAGSLPLSPS AIKTLAVIGP NANVTKTMIG NYEGVACKYT 201: TPLQGLERTV LTTKYHRGCF NVTCTEADLD SAKTLAASAD ATVLVMGADQ TIEKETLDRI DLNLPGKQQE LVTQVAKAAR GPVVLVIMSG GGFDITFAKN 301: DEKITSIMWV GYPGEAGGIA IADVIFGRHN PSGKLPMTWY PQSYVEKVPM TNMNMRPDKS NGYLGRTYRF YIGETVYAFG DGLSYTNFSH QLIKAPKFVS 401: LNLDESQSCR SPECQSLDAI GPHCEKAVGE RSDFEVQLKV RNVGDREGTE TVFLFTTPPE VHGSPRKQLL GFEKIRLGKK EETVVRFKVD VCKDLGVVDE 501: IGKRKLALGH HLLHVGSLKH SFNISV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)