AT5G09410.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ethylene induced calmodulin binding protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2920893..2927291 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121081.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1066 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MARKKKSVSF SHLDIARNEG NKIISFSVHA YSDRLGFVDS LFDYESLRSL LVDFWVYPSM VDRRSFGSIT PPLQLDMEQL LSEAQHRWLR PTEICEILQN 0101: YHKFHIASES PTRPASGSLF LFDRKVLRYF RKDGHNWRKK KDGKTIREAH EKLKVGSIDV LHCYYAHGEA NENFQRRCYW MLEQYYYRKA SSHWVLVATL 0201: SLFSFGYLRP SWVRHLMHIV FVHYLEVKGN RTSIGMKENN SNSVNGTASV NIDSTASPTS TLSSLCEDAD TVLVQGIVNK QVPSYDHLLN LKLEIAMVGH 0301: LLLACVMFHR FMGTESEKMQ PSNTDSMLVE ENSEKGGRLK AEHIRNPLQT QFNWQDDTDL ALFEQSAQDN FETFSSLLGS ENLQPFGISY QAPPSNMDSE 0401: YMPVMKILRR SEDSLKKVDS FSKWAIKELG EMEDLQMQSS RGDIAWTTVE CETAAAGISL SPSLSEDQRF TIVDFWPKSA KTDAEVEVMV IGTFLLSPQE 0501: VTKYNWSCMF GEVEVPAEIL VDGVLCCHAP PHTAGHVPFY VTCSNRFACS EVREFDFLSG STQKINATDV YGTYTNEASL QLRFEKMLAH RDFVHEHHIF 0601: EDVGDKRRQI SKIMLLKEEK EYLLPGTYQR DSTKQEPKGQ LFRELFEEEL YIWLIHKVTE EGKGPNILDE DGQGILHFVA ALGYDWAIKP VLAAGVNINF 0701: RDANGWSALH WAAFSGREET VAVLVSLGAD AGALTDPSPE LPLGKTAADL AYANGHRGIS GFLAESSLTS YLEKLTVDSK ENSPANSCGE KAVQTVSERT 0801: AAPMTYGDVP EKLSLKDSLT AVRNATQAAD RLHQVFRMQS FQRKQLCDIG DDEKIDISDQ LAVSFAASKT KNPGQGDVSL SCAATHIQKK YRGWKKRKEF 0901: LLIRQRIVKI QAHVRGHQVR KQYRTVIWSV GLLEKIILRW RRKGNGLRGF KRNAVAKTVE PEPPVSAICP RIPQEDEYDY LKEGRKQTEE RLQKALTRVK 1001: SMVQYPEARD QYRRLLTVVE GFRENEASSS ASINNKEEEA VNCEEDDFID IESLLNDDTL MMSISP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)