AT5G09230.5
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sirtuin 2 | ||||||||
| Curator Summary (TAIR10) |
Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230). | ||||||||
| Computational Description (TAIR10) |
sirtuin 2 (SRT2); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: chromatin silencing, defense response to bacterium, negative regulation of defense response, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 1 (TAIR:AT5G55760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2871839..2873613 | ||||||||
| Molecular Weight (calculated) | 39398.30 Da | ||||||||
| IEP (calculated) | 8.73 | ||||||||
| GRAVY (calculated) | -0.33 | ||||||||
| Length | 354 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MYRPLQSGGN LVMLFKGCRR FVRTTCRVSI PGGSLGNESK APPRFLRDRK IVPDADPPNM EDIHKLYRLF EQSSRLTILT GAGVSTECGI PDYRSPNGAY 101: SSGFKPITHQ EFTRSSRARR RYWARSYAGW RRFTAAQPGP AHTALASLEK AGRINFMITQ NVDRLHHRAG SDPLELHGTV YTVMCLECGF SFPRDLFQDQ 201: LKAINPKWAE AIESIDHGDP GSEKSFGMKQ RPDGDIEIDE KFWEEGFHIP VCEKCKGVLK PDVIFFGDNI PKERATQAME VAKQSDAFLV LGSSLMTMSA 301: FRLCRAAHEA GAMTAIVNIG ETRADDIVPL KINARVGEIL HRVLDVGSLS VPAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)