AT5G09210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GC-rich sequence DNA-binding factor-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GC-rich sequence DNA-binding factor-like protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein (TAIR:AT5G08550.1); Has 191 Blast hits to 188 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 4; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2862610..2865359 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67894.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTKQPRNYR RRCNDEIDGE DATAAAKPSS SDLYPAKPSS SDLYPWKRRK LPAIPTKNDD DAKGRDHAKS SWLLDLSRGD EFYTQEQMQQ RLKEHSQDER 101: PMEIVFNGER VRSIGMDGLS YVFVCPMPQT ADDKMAALDR ICNAYDERVN SRMPQEQPQM YAGRPEELAK EPDENLTMSI AAAESCPSAP VYKYASLQEI 201: SDFKSVFRNF MQGICVAFVC VSGAFISIKR LLSIFFLSQK NGYLITAIED QMKVDGYSLI VEGDSSTDDE SDCETSAYEE ARDSLLQRAD KIFSDASVVY 301: SELSRVKSIF KRGARHPSPA FRAAYTSLTV PSMYSPYLRL ELLRWDPLHQ DVDFSDMNWH GLLFHSRIVC GSTPVCTNPN FVSELVKYVA VPILHHRIVR 401: CWDILSTRET RNVVAATSLV ARYVFPSSEA LAELSLAIHA RLVEAIIAIS VPTWDPQVSK DVPNAPQVAA YRFGTSVRLM RNICMWKDVM ELPVLEKLAL 501: SDLLFGKVLP HVRSIASESN IHDAVTKTER IVASLSGVWT GPSVTRTHSH LLQPLVDCTL TLGRILEKKV CLGTGRYGNH WSRPQEDVDL QLTDPFSVRI 601: KVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)