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AT5G08580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.669
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT4G27790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRVEeggNOG:KOG4223EMBL:AB006697EMBL:AY059804
EMBL:BT000034EMBL:CP002688EnsemblPlants:AT5G08580EnsemblPlants:AT5G08580.1
entrez:830759Gene3D:1.10.238.10GeneID:830759GO:GO:0005509
GO:GO:0005783GO:GO:0005794GO:GO:0005886GO:GO:0016021
Gramene:AT5G08580.1hmmpanther:PTHR10827hmmpanther:PTHR10827:SF52HOGENOM:HOG000237981
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT5G08580
OMA:FEADVDHPfam:PF13202Pfam:PF13499Pfam:PF13833
Pfscan:PS50222PhylomeDB:Q9FNN0PROSITE:PS00018PROSITE:PS50222
Proteomes:UP000006548RefSeq:NP_568202.1scanprosite:PS00018SMART:SM00054
SMR:Q9FNN0STRING:3702.AT5G08580.1SUPFAM:SSF47473TAIR:AT5G08580
TMHMM:TMhelixUniGene:At.8767UniProt:Q9FNN0
Coordinates (TAIR10) chr5:-:2780976..2782961
Molecular Weight (calculated) 45847.50 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.95
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKASVILYI TVGILVLFLV SYSPKKKGDH DHHHGGHNQH HRLKLRSSFN FKPTRHDPVP FDPLVADMER RREDKEWERQ YIEHSHPELV SHSQKETTGG
101: GHEHAPGHES QPEWEEFMDA EDYLNDEEKF NVTDRLILLF PKIDVSPADG FMTESELTEW TMQSSAKEVV HRTQRDLDVH DRNKDGFISF SEYEPPSWVR
201: KSDNNSFGYD MGWWKEEHFN ASDANGDGLL NLTEFNDFLH PADTKNPKLL LWLCKEEVRE RDSDKDGKIS FEEFFHGLFD TVRNYEEDNH NSTHPYHDLP
301: EGPAKQLFSQ LDKNDDGYLS DVELLPIISK IHPTEHYYAK QQADYIISQA DSDKDRRLTL AEMIEHPYVF YSAIFDEDDT DDDYGFHDEF R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)