AT5G08450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2727970..2732572 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104158.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 918 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGVPKRSHE EGVTHPSSSS SVAKYPHEDS GSYPKSPHQP VTPPPAQVHH NHQQPHQHPQ SQSQSQPQPH LQALPHPHSH SHSHSPLAAA ASASAPYEVE 101: SRTVVKVARS EPRDGERRSP LPLVYRSPSL PTTVSSSDPH LTHAPVPMEP RDGAKDGREI RVESRENRSD GREIYGETKR EIQGPKGDRD VKFERSVDDF 201: SGKGNTGSYT RNDGREMYGE TKREIQGPKS DRDAKFERPG DDFSGKSNAG SYTRDTKFDR ENQNYNEQKG EIKMEKEGHA HLAWKEQKDY HRGKRVAEGS 301: TANVDPWVVS RGNPQGPTEV GPKDLSAPVE GSHLEGRETV GENKVDAKNE DRFKEKDKKR KELKHREWGD RDKDRNDRRV SVLVGSVMSE PKEIGREERE 401: SDRWERERME QKDRERNKEK DKDHIKREPR TGAEKEISQN EKELGEASAK PSEQEYVAPE QKKQNEPDNC EKDERETKEK RRERDGDSEA ERAEKRSRIS 501: EKESEDGCLE GEGATEREKD AFNYGVQQRK RALRPRGSPQ TTNRDNVRSR SQDNEGVQGK SEVSIVVYKV GECMQELIKL WKEYDLSHPD KSGDFANNGP 601: TLEVRIPAEH VTATNRQVRG GQLWGTDIYT DDSDLVAVLM HTGYCRPTAS PPPPTMQELR TTIRVLPSQD YYTSKLRNNV RSRAWGAGIG CSYRVERCYI 701: LKKGGGTIEL EPSLTHSSTV EPTLAPMAVE RSMTTRAAAS NALRQQRFVR EVTIQYNLCN EPWIKYSISI VADKGLKKPL FTSARLKKGE VLYLETHSCR 801: YELCFAGEKT IKAIQASQQQ SSHEAMETDN NNNKSQNHLT NGDKTDSDNS LIDVFRWSRC KKPLPQKLMR SIGFPLPADH IEVLEENLDW EDVQWSQTGV 901: WIAGKEYTLA RVHFLSPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)