AT5G08150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.757 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : suppressor of phytochrome b 5 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SOB5. Activation tagging lines accumulated higher level of cytokinin. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF PHYTOCHROME B 5 (SOB5); Has 1140 Blast hits to 933 proteins in 148 species: Archae - 2; Bacteria - 41; Metazoa - 320; Fungi - 156; Plants - 125; Viruses - 8; Other Eukaryotes - 488 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2622164..2622598 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 16200.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 3.80 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.33 | ||||||||||||||||||||||||||||
| Length | 144 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESANIFGSD EDCRSCESGW TMYLASQSHD RDDDCYYGDD DEEEEDSDGG DSMDSDASSG PMEATSYLKL AQEIEEQNSI KKKKKKTNEE MVLVETTRVH 101: NNINHDDDDD DDEDDGDNHD YDDGNDSYSV VHSYVGSVRQ KGLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)