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AT5G08090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 13 Blast hits to 13 proteins in 8 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 2; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL357612EMBL:CP002688EnsemblPlants:AT5G08090EnsemblPlants:AT5G08090.1
entrez:830703GeneID:830703GO:GO:0016021Gramene:AT5G08090.1
KEGG:ath:AT5G08090PIR:T50494Proteomes:UP000006548RefSeq:NP_196426.1
TAIR:AT5G08090TMHMM:TMhelixUniGene:At.54776UniProt:Q9LEZ7
Coordinates (TAIR10) chr5:+:2591711..2592899
Molecular Weight (calculated) 35958.20 Da
IEP (calculated) 4.77
GRAVY (calculated) 0.74
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGKGFEEDN QTLEILRLAL GWTKSEIYVL TMHWLIVGVE MYLFWPLYPN FPHVWGDSVM GMVMIQYVTG VISYASMSHP LTALTFSHIA TRYVYLYSIY
101: ITSSVAYILF LIVAEVEDNV SVDWISHMLG LLALAFLVAI VSVEFAIGFG SFTSLVCFWY IVKHFKEKET LDPSLAPISS SSEKLNLVIL MALGGAIVFV
201: QIGLAMGLEQ TKLSPIYFGF SFASYVFFRF IEVLEGNITV KSISAHISRC AGILSLCFFV GLISQEFAIG IFVSTLVLLL LYLCKSWCKS WLTNPTAQDL
301: ADEVQTLLQF EDIPHSSGGE IV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)