AT5G07930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MEI2 C-terminal RRM only like 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MEI2 C-terminal RRM only like 2 (MCT2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: terminal EAR1-like 2 (TAIR:AT1G67770.1); Has 545 Blast hits to 437 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 381; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2530865..2532216 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32702.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT 101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN 201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)