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AT5G07610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G49610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYDFeggNOG:ENOG410YS8ZEMBL:AB010070EMBL:CP002688
EnsemblPlants:AT5G07610EnsemblPlants:AT5G07610.1entrez:830654GeneID:830654
Gramene:AT5G07610.1hmmpanther:PTHR31264hmmpanther:PTHR31264:SF14HOGENOM:HOG000090519
InParanoid:Q9FLS0InterPro:IPR001810InterPro:IPR011043InterPro:IPR017451
KEGG:ath:AT5G07610OMA:TRTKAPRPaxDb:Q9FLS0Pfam:PF00646
Pfam:Q9FLS0Pfscan:PS50181PhylomeDB:Q9FLS0PRIDE:Q9FLS0
PRO:PR:Q9FLS0PROSITE:PS50181ProteinModelPortal:Q9FLS0Proteomes:UP000006548
RefSeq:NP_196378.1SMART:SM00256SUPFAM:0047741SUPFAM:SSF50965
SUPFAM:SSF81383TAIR:AT5G07610TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.54768UniProt:Q9FLS0
Coordinates (TAIR10) chr5:+:2406068..2407330
Molecular Weight (calculated) 48314.00 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.30
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSCSRTRTK APRSARSRRN GGFSSSSATI VADIDDVLIQ ILSFLPIKTL LRFKRVSKRW LSLITNPVFS NRVIKSNHPL PISGFFLHSP REIKYSFVSL
101: DDDATNQRIS SSLPLWFTDH QTDMIIMQST NGLLLCKCSC ASSNHFNTNY YVYNPTTKQY TLLHQIAGHI ALSLAFDPSR SPHYKVFCLR GRSNNSFSSA
201: SDSELYHIEV YSSNEGLWRR VVPVPTSPST FIEFSYSVFW NGAVNWYGFS SRDCLSFDIN TQEIKILPLP DHEHEDEPLP DPRILMFLDE SQGNLYYIEV
301: NNQSSSNLRV YEMESNSSSW SVKYNVDLEP LAAAFPEMIR TEYYTDRRIY AFSVIGFVKE ETDAASYILL HIPNQAVKYN FIDKTFKKLC DFKSLVNDAP
401: EDHFYRFQRT FQFIKSLANV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)