AT5G06520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.566 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1987250..1989372 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76701.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 679 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYTSMHKDLR SRQNNSNQVG ADSESTRLVN IRNLAKIVND SRFRSLSPDT PATHDAQDYL WPPSLDMPLL APPVNFSHLP LGITFTRKEL ELIKLTAQFV 101: AVYGKYFQRE LTTRVVESPL FEFLKPTDSR NSFYTRIILG YQGVLMPSQK LKTKSEVFDG FSKLIAQVPV KDEDDVEMAM TDLHAYEYFA NMSINDLRAP 201: APVKFAFLTR GVTFTRNELD TIKLTAQFVA VYGTLFRTEL MKRVFISPKF DFFKSTDSKC SFYLRLVDGY SRVLRRSRKN GAGLGEVVVG FLKLLDQVVE 301: KKDAVEMALT DLHALEFFAN VDGGVLQPRP EQYHPMMPTV PPLIMPQLGS QFTQLQVPQP SCSPPVRMMS PPRPQNDLQS GQSNSNKAPA SVAPIEPPPE 401: IRSCVENTAL IVSKNGLEIE RKMMELSMND ARHRFVWSTD PYHAFYQLKL AEYRAQNQDR AHDIQPNVLR SFGFGFEFPE KEITLKELGI IKLTAQFMAR 501: YGMNFVQGLR KRVVGNPQFK FLESTNNSRF SFYNGLVIAY SRVLMPSKML SKSDDCTATV VDGFLSCLQL EKREEGVDID MIDLLDCFAR LEDADYSANV 601: PQPQHLSTQM QPPHTPETSP PLPLPLKNES SPVLADQHPD SSTIDDEWQV IDFTGQSLPD NVASLKDKTA GGIQIPANK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)