AT5G06330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 1 (TAIR:AT3G11660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1934961..1935584 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 23131.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||
| Length | 207 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSKDCGSHD SHSSCNRKIV IWTISIILLL ILVVILLVWA ILQPSKPRFV LQDATVFNFN VSGNPPNLLT SNFQFTLSSR NPNDKIGIYY DRLDVYASYR 101: SQQITLPSPM LTTYQGHKEV NVWSPFVGGY SVPVAPYNAF YLDQDHSSGA IMLMLHLDGR VRWKVGSFIT GKYHLHVRCH ALINFGSSAA GVIVGKYMLT 201: ETCSVSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)