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AT5G06290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-cysteine peroxiredoxin B
Curator
Summary (TAIR10)
Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.
Computational
Description (TAIR10)
2-cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G11630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06290-MONOMERBioGrid:15796EC:1.11.1.15eggNOG:COG0450
eggNOG:KOG0852EMBL:AB006700EMBL:AF324689EMBL:AF326871
EMBL:AF339693EMBL:AY054621EMBL:AY081503EMBL:CP002688
EnsemblPlants:AT5G06290EnsemblPlants:AT5G06290.1entrez:830517Gene3D:3.40.30.10
GeneID:830517Genevisible:Q9C5R8GO:GO:0004601GO:GO:0009409
GO:GO:0009507GO:GO:0009570GO:GO:0010319GO:GO:0042742
GO:GO:0048046GO:GO:0051920GO:GO:0098869Gramene:AT5G06290.1
hmmpanther:PTHR10681hmmpanther:PTHR10681:SF108HOGENOM:HOG000022343InParanoid:Q9C5R8
IntAct:Q9C5R8InterPro:IPR000866InterPro:IPR012336InterPro:IPR019479
KEGG:ath:AT5G06290KO:K03386OMA:DHRVEEFPaxDb:Q9C5R8
PeroxiBase:4361Pfam:PF00578Pfam:PF10417Pfam:Q9C5R8
Pfscan:PS51352PRIDE:Q9C5R8PRO:PR:Q9C5R8PROSITE:PS51352
ProteinModelPortal:Q9C5R8Proteomes:UP000006548Reactome:R-ATH-3299685Reactome:R-ATH-5628897
RefSeq:NP_568166.1SMR:Q9C5R8STRING:3702.AT5G06290.1SUPFAM:SSF52833
TAIR:AT5G06290tair10-symbols:2-Cys Prx Btair10-symbols:2CPBUniGene:At.7277
UniProt:Q9C5R8
Coordinates (TAIR10) chr5:+:1919380..1921211
Molecular Weight (calculated) 29781.40 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.06
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)