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AT5G05720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.835
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ5eggNOG:KOG0110EMBL:CP002688EnsemblPlants:AT5G05720
EnsemblPlants:AT5G05720.1entrez:830456Gene3D:3.30.70.330GeneID:830456
GO:GO:0000166GO:GO:0003676Gramene:AT5G05720.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF477InParanoid:F4K0T3InterPro:IPR000504InterPro:IPR012677
iPTMnet:F4K0T3KEGG:ath:AT5G05720OMA:ITCEACCPaxDb:F4K0T3
Pfam:PF00076Pfscan:PS50102PRIDE:F4K0T3PROSITE:PS50102
ProteinModelPortal:F4K0T3Proteomes:UP000006548RefSeq:NP_196191.2SMART:SM00360
SMR:F4K0T3STRING:3702.AT5G05720.1SUPFAM:SSF54928TAIR:AT5G05720
UniGene:At.54733UniProt:F4K0T3
Coordinates (TAIR10) chr5:+:1716871..1719541
Molecular Weight (calculated) 50708.10 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.64
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWIIVKNLP SKHVTEERLR DVFSRKGEIA DVKLKRKSDG KSRQFAYIGF RTEQEAQDAI TYVNKCFIDT YRISVEVADP PPREEGKENT EHFSNAYAKG
101: DKKIKKKPEV SPDGADEPNK AKISLLDSKK TRKIKVVALV GDDVSDMEYY KSRTKKNLSD SDSDCETYGC EDAIHVFPID GDIEADRVDK EFTIHVFGFG
201: HQDVVFLEPI EAREALKGMG VQALQRCSPV SGAPRDILEP KALADNNENT SDVEENDVRR RLNLDQQVGI DSDITEVCPL YDCCGRFETM YSELQDTDES
301: LKKHLTELVK QGKILSFKGT VVDGHALILS FSKNKPSGTV GKDLDKDTIL TKLHVKNIAF EATMKEVRQL FTPFGQIKSV GLPERTKGRY AACSSLTSLN
401: ASSTRYLPSL QVIEWKKVDN SMKAIRYRSA AKYVDQENNN PKKRKSSTVV G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)