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AT5G05220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2MSeggNOG:ENOG410Z8N2EMBL:AF446875EMBL:AY052691
EMBL:CP002688EnsemblPlants:AT5G05220EnsemblPlants:AT5G05220.1entrez:830404
GeneID:830404GO:GO:0009507Gramene:AT5G05220.1hmmpanther:PTHR37758
KEGG:ath:AT5G05220OMA:RRAKIFDProteomes:UP000006548RefSeq:NP_568151.1
STRING:3702.AT5G05220.1TAIR:AT5G05220UniGene:At.26487UniProt:Q940U2
Coordinates (TAIR10) chr5:+:1550273..1550821
Molecular Weight (calculated) 20733.50 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.92
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAISQTCTK IITNPSQRIY KTSSPVTAIP QTKLSLKVKK ERWVAAARCV ASGSDYAAAM EPITPEEEEE LTQRRGICGG EVNRGVWELL ECLEKEAIMG
101: NDDGRDPRDY NRRAKIFDKS SKIFKNLNEQ RDQAPVDYLE KEAIMGADDG KDPKDYNRRA KIFDKSSKIF KNIKEQREQS PE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)